| Type | 1979 | 1998/1999 | 2006 |
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| Frigates | 8 | 1 | 1 |
| | 1 Edsall 1,590tons: Rajah Lakandula PS4 | 1 Canon 1750tons: Rajah Humabon PF11 | 1 Canon 1750tons: Rajah Humabon PF11 |
| 4 Barnegat/Casco 2,800tons: Andres Bonifacio PS7, Gregorio del Pilar PS8, Diego Silang PS9, Franciso Dagohoy PS10 | | |
| 3 Canon 1,750tons : Datu Kalantiaw PS76, Datu Sikatuna PF5, Rajah Humabon PF11 (ex-PF78) | | |
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| Corvettes | 11 | 13 | 13 |
| 2 Auk 1,250tons : Rizal PS74(ex-PS69), Quezon PS70 | 2 Auk 1,250tons : Rizal PS74, Quezon PS70 | 2 Auk 1,250tons : Rizal PS74, Quezon PS70 |
| 8 PCE827 914tons : Miguel Malvar PS19, Magat Salamat PS20, Sultan Kudarat PS22, Datu Marikudo PS23, Cebu PS28, Negros Oriental PS29, Pangasinan PS31, Iloilo PS32 | 8 PCE827 914tons : Miguel Malvar PS19, Magat Salamat PS20, Sultan Kudarat PS22, Datu Marikudo PS23, Cebu PS28, Negros Oriental PS29, Pangasinan PS31, Iloilo PS32 | 8 PCE827 914tons : Miguel Malvar PS19, Magat Salamat PS20, Sultan Kudarat PS22, Datu Marikudo PS23, Cebu PS28, Negros Oriental PS29, Pangasinan PS31, Iloilo PS32 |
| 1 (Admirable) | 3 Peacock 763tons : Emilio Jacinto PS35, Apolinario Mabini PS36, Artemio Ricarte PS37 | 3 Peacock 763tons : Emilio Jacinto PS35, Apolinario Mabini PS36, Artemio Ricarte PS37 |
| | | 1 Cyclone 315tons : Mariano Alvarez PS38 |
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| Patrol Boats | 4 PC461 450tons : Batangas PS24, Negros Oriental PS26, Capiz PS27, Nueva Viscaya PS80 | 2 Aguinaldo 279tons : Emilio Aguinaldo PG140, Juan Luna PG141 | 2 Aguinaldo 279tons : Emilio Aguinaldo PG140, Juan Luna PG141 |
| 5 PGM 122tons : Basilan PG60, Agusan PG61, Catanduanes PG62, Romblon PG63, Palawan PG64 | 2 Kagitingan 132tons : Bagong Lakas PG102, Bagong Silang PG104 | 2 Kagitingan 132tons : Bagong Lakas PG102, Bagong Silang PG104 |
| | 5 Batillo 170tons : Tomas Batillo PG110, Bonny Serrano PG111, Bienvenido Salting PG112, Salvador Abcede PG114, Ramon Aguirre PG115 | 6 Batillo 170tons : Tomas Batillo PG110, Bonny Serrano PG111, Bienvenido Salting PG112, Salvador Abcede PG114, Ramon Aguirre PG115, Nicolas Mahusay PG116 |
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| Patrol Craft | 6 (+14?) x Hamelin-type PC | 10+2 Condrado Yap 74.5tons | 10 Condrado Yap 74.5tons |
| | 22+2 Jose Andrada 56tons | 22 Jose Andrada 56tons |
| 15 Swift Mark 1 & 2 coastal PC | | 2 USCG Point WPB 66tons |
| 13 Improved Swift coastal PC | 15 Swift Mark 1 & 2 (PN:10 / PCG:5) | 15 Swift Mark 1 & 2 (PN:10 / PCG:5) |
| 31 de Havilland-type coastal PC | 10 Improved Swift coastal [PN-2 / PCG:8] | 10 Improved Swift coastal [PN:2 / PCG:8] |
| 2 coastal PC | PCG was transferred to DOTC |
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Large Amphibious Vessels | 27 LST | 2 Frank Besson 4,265tons LSV : Bacolod City LC550, Dagupan City LC551 | 2 Frank Besson 4,265tons LSV : Bacolod City LC550, Dagupan City LC551 |
| | 7 LST1/512 4,080tons : Zamboanga del Sur LT86, South Cotabato LT87, Laguna LT501, Lanao del Norte LT504, Benguet LT507, Sierra Madre LT57, Kalinga Apayao LT516 | 6 LST1/512 |
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